SOLUTION TO UPLOAD PROBLEMS:

After 2 days of trial and error I found a solution to the progress bar not appearing.

Basicly follow the guide amin has set out at the beggining of this post.

Then also set these files to 777 chmod

include > settings > upload.php
include > settings > uu_conlib.php

If your cgi-bin is like this one - place the files here and cmod all to 755:

apache/sites/YOURSITE.com/cgi-bin/

Then open:

include > settings > uu_conlib.php

Find on line 25,26:

$path_to_upload_script = $config["baseurl"] . '/cgi-bin/uu_upload.pl';
$path_to_ini_status_script = $config["baseurl"] . '/cgi-bin/uu_ini_status.pl';

Change to:

$path_to_upload_script = '/cgi-bin/uu_upload.pl';
$path_to_ini_status_script = '/cgi-bin/uu_ini_status.pl';

You should be right after that:)